STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB06454.1ATPase, P-type (transporting), HAD superfamily, subfamily IC; COGs: COG0474 Cation transport ATPase; InterProIPR004014:IPR008250:IPR005834:IPR006068:IPR 018303:IPR001757:IPR000695; KEGG: apv:Apar_1038 ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; SPTR: Putative uncharacterized protein; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; IMG reference gene:2503575114; PFAM: E1-E2 ATPase; Cation transporting ATPase, C- [...] (895 aa)    
Predicted Functional Partners:
AEB07612.1
MgtC/SapB transporter; COGs: COG1285 membrane protein; InterPro IPR003416; KEGG: lcz:LCAZH_0578 putative Mg2+ transporter-C (MgtC) family; PFAM: MgtC/SapB transporter; SPTR: Putative uncharacterized protein; IMG reference gene:2503576332; PFAM: MgtC family.
  
 
 0.680
rsgA
Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
       0.588
AEB06453.1
Hypothetical protein; KEGG: fps:FP0168 cell surface leucine-rich repeat-containing protein; SPTR: Probable cell surface protein (Leucine-rich repeat protein); IMG reference gene:2503575113; PFAM: Listeria-Bacteroides repeat domain (List_Bact_rpt); Cna protein B-type domain.
     
 0.500
AEB07174.1
COGs: COG1454 Alcohol dehydrogenase class IV; InterProIPR012079:IPR000408:IPR018211:IPR015590:IPR 001670; KEGG: eel:EUBELI_02054 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; SPTR: Putative uncharacterized protein; IMG reference gene:2503575865; PFAM: Aldehyde dehydrogenase family; Iron-containing alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 0.470
AEB07829.1
Sodium/hydrogen exchanger; COGs: COG4651 Kef-type K+ transport system predicted NAD-binding component; InterPro IPR003148:IPR006037:IPR006153; KEGG: chl:Chy400_3708 sodium/hydrogen exchanger; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; SPTR: Sodium/hydrogen exchanger; IMG reference gene:2503576553; PFAM: TrkA-N domain; TrkA-C domain; Sodium/hydrogen exchanger family; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
  
 0.461
AEB07397.1
COGs: COG3957 Phosphoketolase; InterPro IPR019790:IPR018970:IPR005593:IPR018969; KEGG: apv:Apar_1219 putative phosphoketolase; PFAM: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase-like; D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; PRIAM: Fructose-6-phosphate phosphoketolase; SPTR: Putative uncharacterized protein; IMG reference gene:2503576107; PFAM: XFP N-terminal domain; D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; XFP C-terminal domain.
  
  
 0.452
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
      0.421
AEB06701.1
Band 7 protein; COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: shi:Shel_26530 membrane protease subunit, stomatin/prohibitin; PFAM: band 7 protein; SMART: band 7 protein; SPTR: Putative uncharacterized protein; IMG reference gene:2503575370; PFAM: SPFH domain / Band 7 family.
   
 0.407
AEB07679.1
Band 7 protein; COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: apv:Apar_0055 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein; SPTR: Putative uncharacterized protein; IMG reference gene:2503576399; PFAM: SPFH domain / Band 7 family.
   
 0.407
Your Current Organism:
Coriobacterium glomerans
NCBI taxonomy Id: 700015
Other names: C. glomerans PW2, Coriobacterium glomerans DSM 20642, Coriobacterium glomerans PW2, Coriobacterium glomerans str. PW2, Coriobacterium glomerans strain PW2
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.