STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB06664.1Transcriptional regulator, RpiR family; COGs: COG1737 Transcriptional regulators; InterPro IPR000281:IPR001347; KEGG: cbe:Cbei_0763 RpiR family transcriptional regulator; PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; SPTR: Putative uncharacterized protein; IMG reference gene:2503575332; PFAM: Helix-turn-helix domain, rpiR family; SIS domain. (289 aa)    
Predicted Functional Partners:
AEB07045.1
Transcriptional regulator, RpiR family; COGs: COG1737 Transcriptional regulators; InterPro IPR000276:IPR000281:IPR001347; KEGG: lrh:LGG_00094 hypothetical protein; PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; SPTR: Predicted protein; IMG reference gene:2503575734; PFAM: SIS domain; Helix-turn-helix domain, rpiR family.
  
     0.767
AEB06661.1
Transcriptional regulator, RpiR family; COGs: COG1737 Transcriptional regulators; InterPro IPR000281:IPR001347; KEGG: tpd:Teth39_1153 RpiR family transcriptional regulator; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); SPTR: Putative uncharacterized protein; IMG reference gene:2503575329; PFAM: Helix-turn-helix domain, rpiR family; SIS domain.
  
     0.759
AEB06697.1
Transcriptional regulator, RpiR family; COGs: COG1737 Transcriptional regulators; InterPro IPR000281:IPR001347; KEGG: sga:GALLO_1621 transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); SPTR: Transcriptional regulator, RpiR family protein; IMG reference gene:2503575366; PFAM: Helix-turn-helix domain, rpiR family; SIS domain.
  
     0.749
AEB07401.1
ABC transporter related protein; COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR017871:IPR003439:IPR003339:IPR003593; KEGG: bll:BLJ_1432 fused ATP-binding protein and permease of ABC transporter; PFAM: ABC transporter related; cobalt transport protein; SMART: AAA ATPase; SPTR: Putative uncharacterized protein; IMG reference gene:2503576111; PFAM: ABC transporter; Cobalt transport protein.
  
    0.489
AEB06663.1
alpha-L-rhamnosidase; InterPro IPR013737:IPR008902:IPR016007; KEGG: bfa:Bfae_29670 alpha-L-rhamnosidase; PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; SPTR: Alpha-L-rhamnosidase; IMG reference gene:2503575331; PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain.
     
 0.482
AEB06662.1
Major facilitator superfamily MFS_1; InterPro IPR011701:IPR005829; KEGG: bfa:Bfae_28350 arabinose efflux permease family protein; PFAM: major facilitator superfamily MFS_1; SPTR: Transporter, major facilitator family; IMG reference gene:2503575330; PFAM: Major Facilitator Superfamily.
  
  
 0.479
AEB06665.1
Rhamnulokinase; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR013449; KEGG: cpy:Cphy_1146 rhamnulokinase; PFAM: Carbohydrate kinase, FGGY-like; SPTR: Rhamnulokinase; TIGRFAM: rhamnulokinase; IMG reference gene:2503575333; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: rhamnulokinase.
     
 0.453
AEB07760.1
Transcriptional regulator, RpiR family; COGs: COG1737 Transcriptional regulators; InterPro IPR000281:IPR001347; KEGG: bcl:ABC2085 transcriptional regulator; PFAM: sugar isomerase (SIS); SPTR: Predicted protein; IMG reference gene:2503576481; PFAM: SIS domain; Helix-turn-helix domain, rpiR family.
  
     0.435
Your Current Organism:
Coriobacterium glomerans
NCBI taxonomy Id: 700015
Other names: C. glomerans PW2, Coriobacterium glomerans DSM 20642, Coriobacterium glomerans PW2, Coriobacterium glomerans str. PW2, Coriobacterium glomerans strain PW2
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