STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaACOGs: COG4806 L-rhamnose isomerase; InterPro IPR009308; KEGG: bsu:BSU31180 L-rhamnose isomerase; PFAM: L-rhamnose isomerase; PRIAM: L-rhamnose isomerase; SPTR: Putative uncharacterized protein; IMG reference gene:2503575334; PFAM: L-rhamnose isomerase (RhaA); TIGRFAM: L-rhamnose isomerase; Belongs to the rhamnose isomerase family. (419 aa)    
Predicted Functional Partners:
AEB06665.1
Rhamnulokinase; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR013449; KEGG: cpy:Cphy_1146 rhamnulokinase; PFAM: Carbohydrate kinase, FGGY-like; SPTR: Rhamnulokinase; TIGRFAM: rhamnulokinase; IMG reference gene:2503575333; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: rhamnulokinase.
 
 0.999
AEB06667.1
L-rhamnulose 1-phosphate aldolase; COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: ele:Elen_1116 rhamnulose-1-phosphate aldolase; PFAM: class II aldolase/adducin family protein; PRIAM: Rhamnulose-1-phosphate aldolase; SPTR: Putative uncharacterized protein; IMG reference gene:2503575335; PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: rhamnulose-1-phosphate aldolase.
  
 0.978
AEB06482.1
Carbohydrate kinase, FGGY; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484; KEGG: pru:PRU_0419 carbohydrate kinase domain-containing protein; PFAM: Carbohydrate kinase, FGGY-like; SPTR: Ribulokinase; IMG reference gene:2503575143; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain.
  
  
 0.578
AEB06826.1
Carbohydrate kinase, FGGY; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018483:IPR018484:IPR018485; KEGG: ttr:Tter_2196 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY-like; SPTR: Putative uncharacterized protein; IMG reference gene:2503575501; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; Belongs to the FGGY kinase family.
  
  
 0.578
AEB06908.1
Carbohydrate kinase, FGGY; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: pjd:Pjdr2_1888 carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY-like; SPTR: Carbohydrate kinase FGGY; IMG reference gene:2503575585; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain.
  
  
 0.578
xylB
Xylulokinase; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485:IPR006000; KEGG: ere:EUBREC_2559 xylulokinase; PFAM: Carbohydrate kinase, FGGY-like; SPTR: Xylulokinase; TIGRFAM: xylulokinase; IMG reference gene:2503576540; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: D-xylulose kinase.
  
  
 0.578
AEB07765.1
Xylose isomerase domain-containing protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: efa:EF0438 hypothetical protein; PFAM: Xylose isomerase domain-containing protein TIM barrel; SPTR: AP endonuclease; IMG reference gene:2503576486; PFAM: Xylose isomerase-like TIM barrel.
 
  
 0.467
AEB06613.1
Transcriptional regulator, AraC family; COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR018060:IPR013096:IPR000005; KEGG: clj:CLJU_c13540 putative AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: Helix-turn-helix, AraC domain; SPTR: AraC family transcriptional regulator; IMG reference gene:2503575279; PFAM: Cupin domain; Bacterial regulatory helix-turn-helix proteins, AraC family.
  
  
 0.429
AEB06662.1
Major facilitator superfamily MFS_1; InterPro IPR011701:IPR005829; KEGG: bfa:Bfae_28350 arabinose efflux permease family protein; PFAM: major facilitator superfamily MFS_1; SPTR: Transporter, major facilitator family; IMG reference gene:2503575330; PFAM: Major Facilitator Superfamily.
 
   
 0.400
Your Current Organism:
Coriobacterium glomerans
NCBI taxonomy Id: 700015
Other names: C. glomerans PW2, Coriobacterium glomerans DSM 20642, Coriobacterium glomerans PW2, Coriobacterium glomerans str. PW2, Coriobacterium glomerans strain PW2
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