STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB06773.1Polysaccharide biosynthesis protein; COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: ele:Elen_0415 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein; SPTR: Putative uncharacterized protein; IMG reference gene:2503575446; PFAM: Polysaccharide biosynthesis protein. (490 aa)    
Predicted Functional Partners:
AEB07222.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
  
 0.855
AEB06965.1
InterPro IPR013026:IPR019734:IPR001440; KEGG: apv:Apar_0669 tetratricopeptide domain protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Putative uncharacterized protein; IMG reference gene:2503575646; PFAM: Tetratricopeptide repeat.
 
   
 0.788
AEB06456.1
Flp pilus assembly protein CpaB; InterPro IPR013974:IPR017592; KEGG: ele:Elen_0535 Flp pilus assembly protein CpaB; PFAM: SAF domain protein; SPTR: Putative uncharacterized protein; TIGRFAM: Flp pilus assembly protein CpaB; IMG reference gene:2503575116; PFAM: SAF domain; TIGRFAM: Flp pilus assembly protein CpaB.
  
     0.756
AEB06830.1
KEGG: ele:Elen_2265 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2503575505.
  
  
 0.750
AEB07755.1
Peptidoglycan glycosyltransferase; COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR001182:IPR005311:IPR001460; KEGG: apv:Apar_1344 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; cell cycle protein; Penicillin-binding protein dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Putative uncharacterized protein; IMG reference gene:2503576476; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; Cell cycle protein; Belongs to the SEDS family.
 
   
 0.719
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
 
    0.699
AEB07026.1
Protein of unknown function DUF164; COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: apv:Apar_0733 protein of unknown function DUF164; PFAM: protein of unknown function DUF164; SPTR: Putative uncharacterized protein; IMG reference gene:2503575712; PFAM: Putative zinc ribbon domain.
 
     0.696
AEB06408.1
InterPro IPR006058:IPR017900:IPR017896; KEGG: apv:Apar_0185 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: Putative uncharacterized protein; IMG reference gene:2503575061.
 
   
 0.686
AEB06836.1
COGs: COG3883 conserved hypothetical protein; KEGG: ccu:Ccur_04880 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2503575511.
 
     0.652
tsaD
(SSU ribosomal protein S18P)-alanine acetyltransferase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
 
     0.651
Your Current Organism:
Coriobacterium glomerans
NCBI taxonomy Id: 700015
Other names: C. glomerans PW2, Coriobacterium glomerans DSM 20642, Coriobacterium glomerans PW2, Coriobacterium glomerans str. PW2, Coriobacterium glomerans strain PW2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.