STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB07113.1KEGG: apv:Apar_0454 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2503575803. (128 aa)    
Predicted Functional Partners:
AEB07112.1
RNA polymerase, sigma 37 subunit, RpsB/SigB; COGs: COG1191 DNA-directed RNA polymerase specialized sigma subunit; InterProIPR014322:IPR014284:IPR000943:IPR000792:IPR 007627:IPR007624:IPR007630; KEGG: apv:Apar_0455 RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein; SMART: regulatory protein LuxR; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; IMG reference gene:2503575802; PFAM: S [...]
       0.791
AEB07114.1
KEGG: apv:Apar_0453 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2503575804.
       0.791
AEB07111.1
Protein of unknown function UPF0118; COGs: COG0628 permease; InterPro IPR002549; KEGG: apv:Apar_0456 protein of unknown function UPF0118; PFAM: protein of unknown function UPF0118; SPTR: Putative uncharacterized protein; IMG reference gene:2503575801; PFAM: Domain of unknown function DUF20.
       0.787
AEB07115.1
Recombination protein MgsA; COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; InterPro IPR003593:IPR003959; KEGG: apv:Apar_0452 AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: Putative uncharacterized protein; manually curated; IMG reference gene:2503575805; PFAM: MgsA AAA+ ATPase C terminal; Holliday junction DNA helicase ruvB N-terminus.
       0.560
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.518
AEB07109.1
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.516
Your Current Organism:
Coriobacterium glomerans
NCBI taxonomy Id: 700015
Other names: C. glomerans PW2, Coriobacterium glomerans DSM 20642, Coriobacterium glomerans PW2, Coriobacterium glomerans str. PW2, Coriobacterium glomerans strain PW2
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