STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB07311.1Methyltransferase type 11; InterPro IPR013216; KEGG: ctc:CTC02188 methyltransferase, putative 3-demethylubiquinone-9 3-methyltransferase; PFAM: Methyltransferase type 11; SPTR: Putative uncharacterized protein; IMG reference gene:2503576015; PFAM: Methyltransferase domain. (232 aa)    
Predicted Functional Partners:
AEB07051.1
Iron-only hydrogenase maturation protein HydE; COGs: COG0502 Biotin synthase; InterPro IPR005244:IPR006638:IPR007197; KEGG: cth:Cthe_1839 biotin synthase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Putative uncharacterized protein; IMG reference gene:2503575741; PFAM: Radical SAM superfamily; TIGRFAM: iron-only hydrogenase maturation rSAM protein HydE.
  
  
 0.621
AEB06161.1
Transcriptional regulator, MerR family; COGs: COG0789 transcriptional regulator protein; InterPro IPR000551:IPR010499; KEGG: dhd:Dhaf_2598 transcriptional regulator, MerR family; PFAM: regulatory protein MerR; transcription activator effector binding; SMART: regulatory protein MerR; SPTR: Transcriptional regulator; IMG reference gene:2503574802; PFAM: MerR family regulatory protein; Bacterial transcription activator, effector binding domain.
 
   
 0.592
tsaD
(SSU ribosomal protein S18P)-alanine acetyltransferase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
  
 0.581
AEB07310.1
InterPro IPR002528; KEGG: cbe:Cbei_3145 MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; SPTR: Putative uncharacterized protein; IMG reference gene:2503576014; PFAM: MatE.
  
  
 0.568
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
  
 
 0.473
AEB07222.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
 
 0.460
AEB06249.1
Carboxylyase-related protein; COGs: COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylase; InterPro IPR002830; KEGG: enc:ECL_01944 3,4-dihydroxybenzoate decarboxylase; PFAM: Carboxylyase-related protein; SPTR: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; IMG reference gene:2503574896; PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: UbiD family decarboxylases; Belongs to the UbiD family.
 
  
 0.435
argH
COGs: COG0165 Argininosuccinate lyase; InterPro IPR009049:IPR020557:IPR003031:IPR000362; KEGG: ele:Elen_2338 argininosuccinate lyase; PFAM: fumarate lyase; SPTR: Putative uncharacterized protein; TIGRFAM: argininosuccinate lyase; IMG reference gene:2503576013; PFAM: Lyase; TIGRFAM: argininosuccinate lyase.
  
  
 0.417
AEB06160.1
Uncharacterized protein family UPF0066; COGs: COG1720 conserved hypothetical protein; InterPro IPR001378; KEGG: dhd:Dhaf_2599 protein of unknown function UPF0066; PFAM: Uncharacterised protein family UPF0066; SPTR: Putative uncharacterized protein; IMG reference gene:2503574801; PFAM: Uncharacterised protein family UPF0066; TIGRFAM: putative methyltransferase, YaeB/AF_0241 family.
 
   
 0.415
rlmL
rRNA (guanine-N(2)-)-methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.
  
  
 0.414
Your Current Organism:
Coriobacterium glomerans
NCBI taxonomy Id: 700015
Other names: C. glomerans PW2, Coriobacterium glomerans DSM 20642, Coriobacterium glomerans PW2, Coriobacterium glomerans str. PW2, Coriobacterium glomerans strain PW2
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