STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB07505.1Haloacid dehalogenase domain protein hydrolase type 3; COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR013200; KEGG: fal:FRAAL6699 hypothetical protein; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; SPTR: Putative uncharacterized protein; IMG reference gene:2503576221; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB. (304 aa)    
Predicted Functional Partners:
AEB06408.1
InterPro IPR006058:IPR017900:IPR017896; KEGG: apv:Apar_0185 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: Putative uncharacterized protein; IMG reference gene:2503575061.
 
    0.786
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.778
AEB07255.1
KEGG: apv:Apar_0877 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2503575954.
 
     0.773
AEB07343.1
InterPro IPR002645:IPR003594; KEGG: apv:Apar_0915 anti-sigma-factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; ATP-binding region ATPase domain protein; SPTR: Anti-sigma factor antagonist; IMG reference gene:2503576052; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; STAS domain; TIGRFAM: anti-anti-sigma factor.
 
     0.768
rph
RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
       0.765
AEB07069.1
Regulatory protein MerR; InterPro IPR000551; KEGG: apv:Apar_0754 transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: Putative uncharacterized protein; IMG reference gene:2503575759; PFAM: MerR family regulatory protein.
 
     0.756
AEB07523.1
COGs: COG3629 DNA-binding transcriptional activator of the SARP family; KEGG: ele:Elen_2003 transcriptional regulator, SARP family; SPTR: Putative uncharacterized protein; IMG reference gene:2503576241; PFAM: Bacterial transcriptional activator domain.
  
     0.736
AEB07199.1
COGs: COG0392 integral membrane protein; InterPro IPR005242; KEGG: apv:Apar_0911 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2503575890; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein.
 
     0.728
AEB06965.1
InterPro IPR013026:IPR019734:IPR001440; KEGG: apv:Apar_0669 tetratricopeptide domain protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Putative uncharacterized protein; IMG reference gene:2503575646; PFAM: Tetratricopeptide repeat.
 
    0.726
AEB07345.1
Protein serine phosphatase with GAF(s) sensor(s); COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR003018:IPR010822:IPR001932; KEGG: apv:Apar_0916 putative PAS/PAC sensor protein; PFAM: Stage II sporulation protein E; GAF domain protein; SMART: protein phosphatase 2C domain protein; GAF domain protein; SPTR: Putative uncharacterized protein; IMG reference gene:2503576054; PFAM: GAF domain; Stage II sporulation protein E (SpoIIE).
 
     0.696
Your Current Organism:
Coriobacterium glomerans
NCBI taxonomy Id: 700015
Other names: C. glomerans PW2, Coriobacterium glomerans DSM 20642, Coriobacterium glomerans PW2, Coriobacterium glomerans str. PW2, Coriobacterium glomerans strain PW2
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