STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB07796.1Xylan 1,4-beta-xylosidase; COGs: COG3507 Beta-xylosidase; InterPro IPR018247:IPR006710; KEGG: llc:LACR_1291 beta-xylosidase; PFAM: glycoside hydrolase family 43; PRIAM: Xylan 1,4-beta-xylosidase; SPTR: Beta-xylosidase; IMG reference gene:2503576518; PFAM: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family. (552 aa)    
Predicted Functional Partners:
AEB07773.1
Xylan 1,4-beta-xylosidase; COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: scl:sce4884 xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 43; PRIAM: Xylan 1,4-beta-xylosidase; SPTR: Xylan beta-1,4-xylosidase; IMG reference gene:2503576495; PFAM: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
  
  
 
0.920
AEB06675.1
Xylan 1,4-beta-xylosidase; COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: llk:LLKF_1625 beta-1,4-xylosidase; PFAM: glycoside hydrolase family 43; PRIAM: Xylan 1,4-beta-xylosidase; SPTR: Beta-1,4-xylosidase; IMG reference gene:2503575344; PFAM: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
  
  
 
0.918
AEB07803.1
Transcriptional regulator, AraC family; COGs: COG3664 Beta-xylosidase; InterPro IPR018060:IPR000005:IPR000514; KEGG: aoe:Clos_0056 AraC family transcriptional regulator; PFAM: glycoside hydrolase family 39; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Predicted protein; IMG reference gene:2503576527; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; Glycosyl hydrolases family 39.
    
 0.916
AEB06433.1
Glycoside hydrolase family 43; COGs: COG3507 Beta-xylosidase; InterPro IPR000421:IPR006710:IPR022272; KEGG: cmi:CMM_0103 beta-xylosidase glycosyl hydrolase family 43; PFAM: glycoside hydrolase family 43; coagulation factor 5/8 type domain protein; SPTR: Putative beta-xylosidase, glycosyl hydrolase family 43; IMG reference gene:2503575091; PFAM: F5/8 type C domain; Glycosyl hydrolases family 43.
 
  
  0.913
AEB06481.1
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.845
uxaC
COGs: COG1904 Glucuronate isomerase; InterPro IPR003766; KEGG: lsa:LSA0129 glucuronate isomerase; PFAM: Glucuronate isomerase; PRIAM: Glucuronate isomerase; SPTR: Glucuronate isomerase; IMG reference gene:2503575338; PFAM: Glucuronate isomerase.
    
 0.832
AEB07795.1
Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005:IPR020449; KEGG: llc:LACR_1288 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; IMG reference gene:2503576517; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain.
 
   
 0.676
AEB07793.1
COGs: COG2730 Endoglucanase; KEGG: llm:llmg_1321 hypothetical protein; PRIAM: Glucan 1,3-beta-glucosidase; SPTR: Putative uncharacterized protein; IMG reference gene:2503576515; PFAM: Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
   
 0.624
AEB07708.1
Major facilitator superfamily MFS_1; COGs: COG2211 Na+/melibiose symporter and related transporter; InterPro IPR005829:IPR011701; KEGG: bde:BDP_0162 MFS-type transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Putative uncharacterized protein; IMG reference gene:2503576428; PFAM: Major Facilitator Superfamily.
 
  
 0.414
AEB07704.1
Major facilitator superfamily MFS_1; COGs: COG2211 Na+/melibiose symporter and related transporter; InterPro IPR011701; KEGG: bde:BDP_1670 ScrT sucrose transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Putative uncharacterized protein; IMG reference gene:2503576424; PFAM: Major Facilitator Superfamily.
 
  
 0.400
Your Current Organism:
Coriobacterium glomerans
NCBI taxonomy Id: 700015
Other names: C. glomerans PW2, Coriobacterium glomerans DSM 20642, Coriobacterium glomerans PW2, Coriobacterium glomerans str. PW2, Coriobacterium glomerans strain PW2
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.