STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEV96430.1PFAM: Fatty acid desaturase; COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: chu:CHU_3762 fatty acid desaturase; PFAM: Fatty acid desaturase, type 1; PRIAM: Linoleoyl-CoA desaturase; SPTR: Fatty acid desaturase. (357 aa)    
Predicted Functional Partners:
AEV96431.1
Radical SAM domain protein; PFAM: B12 binding domain; InterPro IPR007197; KEGG: amt:Amet_3280 radical SAM domain-containing protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein.
       0.773
AEV99787.1
KEGG: cpi:Cpin_2391 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.507
AEW01810.1
KEGG: cpi:Cpin_7104 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
  
     0.502
AEW00384.1
KEGG: cpi:Cpin_2391 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.482
AEW00741.1
Hypothetical protein; PFAM: PspC domain; KEGG: cpi:Cpin_2017 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.429
AEV96429.1
PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: ppn:Palpr_2640 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family.
       0.423
Your Current Organism:
Niastella koreensis
NCBI taxonomy Id: 700598
Other names: N. koreensis GR20-10, Niastella koreensis DSM 17620, Niastella koreensis GR20-10, Niastella koreensis NBRC 106392, Niastella koreensis str. GR20-10, Niastella koreensis strain GR20-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.