STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEV97455.1PFAM: HNH endonuclease; Protein of unknown function DUF262; InterPro IPR003615:IPR004919; KEGG: cbb:CLD_0522 hypothetical protein; PFAM: Protein of unknown function DUF262; SMART: HNH nuclease; SPTR: Putative uncharacterized protein. (860 aa)    
Predicted Functional Partners:
AEV99700.1
PFAM: TraG/TraD family; COGs: COG3505 Type IV secretory pathway VirD4 protein; InterPro IPR003688; KEGG: cpi:Cpin_6326 TraG family protein; PFAM: TRAG protein; SPTR: TRAG family protein.
   
 
 0.617
AEW02342.1
PFAM: TraG/TraD family; COGs: COG3505 Type IV secretory pathway VirD4 protein; InterPro IPR003688; KEGG: cpi:Cpin_6326 TraG family protein; PFAM: TRAG protein; SPTR: TRAG family protein.
   
 
 0.617
AEV97456.1
Hypothetical protein; COGs: COG3593 ATP-dependent endonuclease of the OLD family; KEGG: dat:HRM2_44740 hypothetical protein; SPTR: Putative uncharacterized protein.
     
 0.491
AEV99690.1
PFAM: Type I restriction modification DNA specificity domain; InterPro IPR000055; KEGG: mfe:Mefer_0543 N-6 DNA methylase; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Genome sequencing data, contig C300.
 
    0.450
AEW02363.1
Helix-turn-helix domain protein; PFAM: Helix-turn-helix; InterPro IPR001387; KEGG: cpi:Cpin_3505 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Immunity repressor.
 
   
 0.433
AEV98773.1
KEGG: sli:Slin_2105 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.400
Your Current Organism:
Niastella koreensis
NCBI taxonomy Id: 700598
Other names: N. koreensis GR20-10, Niastella koreensis DSM 17620, Niastella koreensis GR20-10, Niastella koreensis NBRC 106392, Niastella koreensis str. GR20-10, Niastella koreensis strain GR20-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.