Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AEV97808.1 | AEV97809.1 | Niako_1437 | Niako_1438 | PFAM: NmrA-like family; InterPro IPR008030; KEGG: phe:Phep_3848 NmrA family protein; SPTR: NmrA family protein. | PFAM: HxlR-like helix-turn-helix; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: phe:Phep_3847 HxlR type helix-turn-helix protein; PFAM: Helix-turn-helix, HxlR type; SPTR: Helix-turn-helix HxlR type. | 0.561 |
AEV97809.1 | AEV97808.1 | Niako_1438 | Niako_1437 | PFAM: HxlR-like helix-turn-helix; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: phe:Phep_3847 HxlR type helix-turn-helix protein; PFAM: Helix-turn-helix, HxlR type; SPTR: Helix-turn-helix HxlR type. | PFAM: NmrA-like family; InterPro IPR008030; KEGG: phe:Phep_3848 NmrA family protein; SPTR: NmrA family protein. | 0.561 |
AEV97809.1 | AEV99638.1 | Niako_1438 | Niako_3323 | PFAM: HxlR-like helix-turn-helix; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: phe:Phep_3847 HxlR type helix-turn-helix protein; PFAM: Helix-turn-helix, HxlR type; SPTR: Helix-turn-helix HxlR type. | PFAM: HxlR-like helix-turn-helix; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: sme:SMc02225 hypothetical protein; PFAM: Helix-turn-helix, HxlR type; SPTR: Hypothetical transmembrane protein. | 0.469 |
AEV99638.1 | AEV97809.1 | Niako_3323 | Niako_1438 | PFAM: HxlR-like helix-turn-helix; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: sme:SMc02225 hypothetical protein; PFAM: Helix-turn-helix, HxlR type; SPTR: Hypothetical transmembrane protein. | PFAM: HxlR-like helix-turn-helix; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: phe:Phep_3847 HxlR type helix-turn-helix protein; PFAM: Helix-turn-helix, HxlR type; SPTR: Helix-turn-helix HxlR type. | 0.469 |