STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEV98100.1KEGG: cpi:Cpin_3044 alpha/beta hydrolase; SPTR: Alpha/beta hydrolase fold protein. (277 aa)    
Predicted Functional Partners:
AEV98101.1
PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; COGs: COG3604 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains; InterPro IPR002078:IPR002197:IPR003593; KEGG: cpi:Cpin_1347 fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; SPTR: Sigma-54-dependent transcriptional regulator.
  
    0.563
AEV98099.1
PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; COGs: COG3604 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains; InterPro IPR002078:IPR002197:IPR003593; KEGG: cpi:Cpin_1347 fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; SPTR: Transcriptional regulator, NifA subfamily, Fis Family.
  
    0.475
AEV98098.1
KEGG: cpi:Cpin_0836 hypothetical protein; SPTR: Putative uncharacterized protein.
 
  
 0.473
AEV98102.1
Putative transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: cpi:Cpin_0260 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding; SPTR: Putative transcriptional regulator, Crp/Fnr family.
  
    0.461
AEV98677.1
Long-chain-fatty-acid--(acyl-carrier-protein) ligase; PFAM: Phosphopantetheine attachment site; AMP-binding enzyme; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873:IPR006163; KEGG: syp:SYNPCC7002_A1979 AMP-binding enzyme; PFAM: AMP-dependent synthetase/ligase; Phosphopantetheine-binding; PRIAM: Long-chain-fatty-acid--[acyl-carrier-protein] ligase; SPTR: AMP-binding enzyme.
   
 
 0.453
Your Current Organism:
Niastella koreensis
NCBI taxonomy Id: 700598
Other names: N. koreensis GR20-10, Niastella koreensis DSM 17620, Niastella koreensis GR20-10, Niastella koreensis NBRC 106392, Niastella koreensis str. GR20-10, Niastella koreensis strain GR20-10
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