STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEV98330.1Protein of unknown function DUF92 transmembrane; PFAM: Integral membrane protein DUF92; TIGRFAM: TIGR00297 family protein; COGs: COG1836 membrane protein; InterPro IPR002794; KEGG: cpi:Cpin_4686 hypothetical protein; PFAM: Protein of unknown function DUF92, transmembrane; SPTR: Putative uncharacterized protein. (236 aa)    
Predicted Functional Partners:
AEV98331.1
Hypothetical protein; PFAM: DEAD/DEAH box helicase; COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; KEGG: syn:sll1582 hypothetical protein; SPTR: Sll1582 protein.
 
     0.710
hemL
PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; COGs: COG0001 Glutamate-1-semialdehyde aminotransferase; HAMAP: Glutamate-1-semialdehyde 2,1-aminomutase; InterPro IPR005814:IPR004639; KEGG: cpi:Cpin_6505 glutamate-1-semialdehyde-2,1-aminomutase; PFAM: Aminotransferase class-III; PRIAM: Glutamate-1-semialdehyde 2,1-aminomutase; SPTR: Glutamate-1-semialdehyde 2,1-aminomutase; TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase.
 
      0.464
AEW03494.1
Mannosylglycoprotein endo-beta-mannosidase; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104; KEGG: cpi:Cpin_2275 glycoside hydrolase family 2 sugar binding; PFAM: Glycoside hydrolase family 2, carbohydrate-binding; PRIAM: Mannosylglycoprotein endo-beta-mannosidase; SPTR: Glycosyl hydrolase.
  
     0.400
Your Current Organism:
Niastella koreensis
NCBI taxonomy Id: 700598
Other names: N. koreensis GR20-10, Niastella koreensis DSM 17620, Niastella koreensis GR20-10, Niastella koreensis NBRC 106392, Niastella koreensis str. GR20-10, Niastella koreensis strain GR20-10
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