STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEV98470.1Hypothetical protein. (181 aa)    
Predicted Functional Partners:
AEV98471.1
TPR repeat-containing protein; COGs: COG5616 integral membrane protein; KEGG: sus:Acid_3094 TPR repeat-containing protein; SPTR: Putative transmembrane adenylate cyclase.
       0.773
AEV98469.1
OmpA/MotB domain protein; PFAM: OmpA family; COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: psn:Pedsa_2610 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein.
       0.628
AEV98472.1
KEGG: osp:Odosp_0559 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.584
AEV98473.1
KEGG: osp:Odosp_1942 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.576
AEV98468.1
PFAM: Pentapeptide repeats (8 copies); InterPro IPR001646; KEGG: ana:alr9014 hypothetical protein; PFAM: Pentapeptide repeat; SPTR: Alr9014 protein.
       0.477
AEV98474.1
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: chu:CHU_0262 RNA polymerase sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase sigma factor (Possible RNA polymerase sigma-24 factor); TIGRFAM: RNA polymerase sigma-70; Belongs to the sigma-70 factor family. ECF subfamily.
       0.400
Your Current Organism:
Niastella koreensis
NCBI taxonomy Id: 700598
Other names: N. koreensis GR20-10, Niastella koreensis DSM 17620, Niastella koreensis GR20-10, Niastella koreensis NBRC 106392, Niastella koreensis str. GR20-10, Niastella koreensis strain GR20-10
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