STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEV99966.1anti-FecI sigma factor, FecR; PFAM: FecR protein; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: psn:Pedsa_0070 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR. (406 aa)    
Predicted Functional Partners:
AEV97603.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: dfe:Dfer_2117 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR.
  
     0.762
AEV98996.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: dfe:Dfer_2450 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR.
  
     0.760
AEW00464.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: cpi:Cpin_2819 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR.
  
     0.755
AEV99304.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: dfe:Dfer_2206 anti-FecI sigma factor, FecR; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR.
  
     0.729
AEV99008.1
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: shg:Sph21_2938 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70.
  
   0.714
AEV99303.1
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR014327:IPR007627:IPR013249; KEGG: lby:Lbys_2250 RNA polymerase, sigma-24 subunit, ecf subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-7 [...]
  
   0.712
AEV98960.1
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR014327:IPR007627:IPR013249; KEGG: sli:Slin_4780 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-7 [...]
  
   0.645
AEV99967.1
PFAM: Phospholipase D Active site motif; COGs: COG1502 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; InterPro IPR001736; KEGG: cko:CKO_02338 cardiolipin synthase 2; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase; SPTR: Putative uncharacterized protein.
       0.641
AEW01453.1
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR014327:IPR013249; KEGG: dfe:Dfer_2829 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70, Bacteroidetes type; RNA polymerase sigma-70.
  
   0.636
AEV99571.1
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR013249:IPR014284; KEGG: cpi:Cpin_5523 LuxR family transcriptional regulator; PFAM: RNA polymerase sigma factor 70, region 4 type 2; SPTR: Transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma-70; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.633
Your Current Organism:
Niastella koreensis
NCBI taxonomy Id: 700598
Other names: N. koreensis GR20-10, Niastella koreensis DSM 17620, Niastella koreensis GR20-10, Niastella koreensis NBRC 106392, Niastella koreensis str. GR20-10, Niastella koreensis strain GR20-10
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