STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEW00377.1KEGG: cpi:Cpin_1099 hypothetical protein; SPTR: Putative uncharacterized protein. (266 aa)    
Predicted Functional Partners:
AEW00378.1
Hypothetical protein; PFAM: SusD family; KEGG: cpi:Cpin_1098 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.758
AEW00379.1
PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012910; KEGG: cpi:Cpin_1097 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: Putative outer membrane protein.
       0.747
AEW00376.1
Hypothetical protein; PFAM: PKD domain; KEGG: cpi:Cpin_1100 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.714
AEW00375.1
PFAM: AhpC/TSA family; InterPro IPR000866; KEGG: ppn:Palpr_2531 alkyl hydroperoxide reductase/thiol specific antioxidant/mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen.
       0.623
AEW00380.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; COGs: COG3712 Fe2+-dicitrate sensor membrane component; InterPro IPR006860; KEGG: phe:Phep_0724 FecR protein; PFAM: FecR protein; SPTR: Anti-FecI sigma factor, FecR.
       0.404
Your Current Organism:
Niastella koreensis
NCBI taxonomy Id: 700598
Other names: N. koreensis GR20-10, Niastella koreensis DSM 17620, Niastella koreensis GR20-10, Niastella koreensis NBRC 106392, Niastella koreensis str. GR20-10, Niastella koreensis strain GR20-10
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