Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AEV98602.1 | AEW00385.1 | Niako_2249 | Niako_4106 | PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: cpi:Cpin_2655 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family. | PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR003313:IPR000005:IPR018060; KEGG: chu:CHU_3253 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; AraC protein, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family. | 0.643 |
AEW00384.1 | AEW00385.1 | Niako_4105 | Niako_4106 | KEGG: cpi:Cpin_2391 hypothetical protein; SPTR: Putative uncharacterized protein. | PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR003313:IPR000005:IPR018060; KEGG: chu:CHU_3253 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; AraC protein, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family. | 0.779 |
AEW00384.1 | AEW00386.1 | Niako_4105 | Niako_4107 | KEGG: cpi:Cpin_2391 hypothetical protein; SPTR: Putative uncharacterized protein. | KEGG: bfo:BRAFLDRAFT_89036 hypothetical protein; SPTR: Putative uncharacterized protein. | 0.522 |
AEW00385.1 | AEV98602.1 | Niako_4106 | Niako_2249 | PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR003313:IPR000005:IPR018060; KEGG: chu:CHU_3253 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; AraC protein, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family. | PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: cpi:Cpin_2655 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family. | 0.643 |
AEW00385.1 | AEW00384.1 | Niako_4106 | Niako_4105 | PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR003313:IPR000005:IPR018060; KEGG: chu:CHU_3253 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; AraC protein, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family. | KEGG: cpi:Cpin_2391 hypothetical protein; SPTR: Putative uncharacterized protein. | 0.779 |
AEW00385.1 | AEW00386.1 | Niako_4106 | Niako_4107 | PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR003313:IPR000005:IPR018060; KEGG: chu:CHU_3253 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; AraC protein, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family. | KEGG: bfo:BRAFLDRAFT_89036 hypothetical protein; SPTR: Putative uncharacterized protein. | 0.522 |
AEW00386.1 | AEW00384.1 | Niako_4107 | Niako_4105 | KEGG: bfo:BRAFLDRAFT_89036 hypothetical protein; SPTR: Putative uncharacterized protein. | KEGG: cpi:Cpin_2391 hypothetical protein; SPTR: Putative uncharacterized protein. | 0.522 |
AEW00386.1 | AEW00385.1 | Niako_4107 | Niako_4106 | KEGG: bfo:BRAFLDRAFT_89036 hypothetical protein; SPTR: Putative uncharacterized protein. | PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR003313:IPR000005:IPR018060; KEGG: chu:CHU_3253 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; AraC protein, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family. | 0.522 |