STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEW01007.1Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: vfm:VFMJ11_A0982 transcriptional regulatory protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: AraC-type DNA-binding domain-containing protein. (129 aa)    
Predicted Functional Partners:
AEW01008.1
KEGG: phe:Phep_1654 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
       0.773
AEW01009.1
Redoxin domain protein; PFAM: Redoxin; InterPro IPR013740; KEGG: cpi:Cpin_0030 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Redoxin; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen.
       0.773
Your Current Organism:
Niastella koreensis
NCBI taxonomy Id: 700598
Other names: N. koreensis GR20-10, Niastella koreensis DSM 17620, Niastella koreensis GR20-10, Niastella koreensis NBRC 106392, Niastella koreensis str. GR20-10, Niastella koreensis strain GR20-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.