STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEW01099.1PFAM: HxlR-like helix-turn-helix; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: cpi:Cpin_3041 HxlR family transcriptional regulator; PFAM: Helix-turn-helix, HxlR type; SPTR: Transcriptional regulator, HxlR family. (115 aa)    
Predicted Functional Partners:
AEV99638.1
PFAM: HxlR-like helix-turn-helix; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: sme:SMc02225 hypothetical protein; PFAM: Helix-turn-helix, HxlR type; SPTR: Hypothetical transmembrane protein.
  
     0.558
AEW01098.1
Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase; COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: cpi:Cpin_0085 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.523
AEW01100.1
PFAM: alpha/beta hydrolase fold; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: bpy:Bphyt_4123 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold.
  
    0.513
AEV97927.1
PFAM: HxlR-like helix-turn-helix; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: shg:Sph21_4076 transcriptional regulator, HxlR family; PFAM: Helix-turn-helix, HxlR type; SPTR: Transcriptional regulator, HxlR family.
  
     0.466
Your Current Organism:
Niastella koreensis
NCBI taxonomy Id: 700598
Other names: N. koreensis GR20-10, Niastella koreensis DSM 17620, Niastella koreensis GR20-10, Niastella koreensis NBRC 106392, Niastella koreensis str. GR20-10, Niastella koreensis strain GR20-10
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