STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEW01276.1KEGG: cpi:Cpin_1526 hypothetical protein; SPTR: Putative uncharacterized protein. (154 aa)    
Predicted Functional Partners:
AEW01350.1
DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; InterPro IPR003716; KEGG: cpi:Cpin_6967 DNA-directed RNA polymerase, omega subunit; SPTR: DNA-directed RNA polymerase, omega subunit; TIGRFAM: DNA-directed RNA polymerase, omega subunit.
  
     0.769
AEV98381.1
InterPro IPR019734:IPR001440; KEGG: cpi:Cpin_5454 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: Tetratricopeptide domain protein.
  
     0.733
AEW03539.1
KEGG: cpi:Cpin_6980 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.722
AEW02808.1
KEGG: cpi:Cpin_1014 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.710
AEW03074.1
PFAM: Uroporphyrinogen-III synthase HemD; COGs: COG1587 Uroporphyrinogen-III synthase; InterPro IPR003754; KEGG: cpi:Cpin_0486 uroporphyrinogen III synthase HEM4; PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; SPTR: Uroporphyrinogen III synthase HEM4.
  
     0.702
rpsU
PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; HAMAP: Ribosomal protein S21; InterPro IPR001911; KEGG: cpi:Cpin_1697 ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
     0.679
AEV99985.1
PUR-alpha/beta/gamma DNA/RNA-binding protein; PFAM: Protein of unknown function (DUF3276); InterPro IPR006628; KEGG: cpi:Cpin_5495 PUR-alpha/beta/gamma DNA/RNA-binding; SMART: PUR-alpha/beta/gamma, DNA/RNA-binding; SPTR: PUR-alpha/beta/gamma DNA/RNA-binding.
  
     0.657
AEW02818.1
PFAM: Surface antigen variable number repeat; TIGRFAM: outer membrane protein assembly complex, YaeT protein; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827:IPR000184; KEGG: cpi:Cpin_1052 surface antigen variable number repeat protein; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Surface antigen variable number repeat protein.
  
     0.657
AEW01714.1
PFAM: Protein of unknown function (DUF2795); KEGG: cpi:Cpin_6891 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.653
AEW02095.1
PFAM: Protein of unknown function (DUF2723); KEGG: cpi:Cpin_4667 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.644
Your Current Organism:
Niastella koreensis
NCBI taxonomy Id: 700598
Other names: N. koreensis GR20-10, Niastella koreensis DSM 17620, Niastella koreensis GR20-10, Niastella koreensis NBRC 106392, Niastella koreensis str. GR20-10, Niastella koreensis strain GR20-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.