STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEW02338.1KEGG: cpi:Cpin_6321 hypothetical protein; SPTR: Putative uncharacterized protein. (117 aa)    
Predicted Functional Partners:
AEW02339.1
Hypothetical protein; PFAM: Relaxase/Mobilisation nuclease domain; KEGG: cpi:Cpin_6324 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
       0.608
AEW02340.1
PFAM: Bacterial mobilisation protein (MobC); InterPro IPR014795:IPR008687; KEGG: cpi:Cpin_6325 mobilisation protein; PFAM: Bacterial mobilisation; Protein of unknown function DUF1778; SPTR: Mobilisation protein.
       0.608
AEW02341.1
Hypothetical protein.
       0.406
AEW02342.1
PFAM: TraG/TraD family; COGs: COG3505 Type IV secretory pathway VirD4 protein; InterPro IPR003688; KEGG: cpi:Cpin_6326 TraG family protein; PFAM: TRAG protein; SPTR: TRAG family protein.
       0.403
Your Current Organism:
Niastella koreensis
NCBI taxonomy Id: 700598
Other names: N. koreensis GR20-10, Niastella koreensis DSM 17620, Niastella koreensis GR20-10, Niastella koreensis NBRC 106392, Niastella koreensis str. GR20-10, Niastella koreensis strain GR20-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.