STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORA94517.1Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (522 aa)    
Predicted Functional Partners:
ORA85666.1
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.735
ORA90671.1
Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.592
ORA94518.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.589
ORA94963.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.537
ORA86078.1
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.527
ORA93408.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.513
ORA95596.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.474
ORA91501.1
Cobaltochelatase subunit CobN; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.452
ORA88120.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.451
rnz
Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA.
 
   
 0.448
Your Current Organism:
Mycobacterium marseillense
NCBI taxonomy Id: 701042
Other names: CCUG 56325, CIP 109828, CSUR P30, DSM 45437, JCM 17324, M. marseillense, Mycobacterium marseillense Ben Salah et al. 2009, Mycobacterium sp. 1165549.7, strain 5356591
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