STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADO46289.1KEGG: enc:ECL_00012 D-galactonate transporter; TIGRFAM: d-galactonate transporter; phosphoglycerate transporter; PFAM: major facilitator superfamily MFS_1. (430 aa)    
Predicted Functional Partners:
ADO46286.1
2-dehydro-3-deoxygalactonokinase; KEGG: enc:ECL_00009 2-keto-3-deoxygalactonate kinase; PFAM: 2-keto-3-deoxy-galactonokinase.
 
  
 0.729
ADO46285.1
GntR domain protein; KEGG: enc:ECL_00008 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
 
   
 0.715
dgoD
Mandelate racemase/muconate lactonizing protein; Catalyzes the dehydration of D-galactonate to 2-keto-3-deoxy- D-galactonate.
 
  
 0.658
ADO46287.1
PFAM: KDPG and KHG aldolase; KEGG: ent:Ent638_0008 2-dehydro-3-deoxy-6-phosphogalactonate aldolase.
 
   
 0.639
ADO46290.1
KEGG: enc:ECL_00013 putative ATP/GTP-binding protein.
       0.610
ADO49342.1
PFAM: Heparinase II/III family protein; KEGG: ypy:YPK_3711 heparinase II/III family protein.
 
    0.535
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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