STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADO46299.1KEGG: kpu:KP1_5460 hypothetical protein. (120 aa)    
Predicted Functional Partners:
ADO46298.1
PFAM: protein of unknown function DUF202; KEGG: efe:EFER_3976 conserved hypothetical protein; putative inner membrane protein.
  
    0.811
ADO46300.1
Radical SAM domain protein; KEGG: cro:ROD_40521 probable arylsulfatase-activating protein; manually curated; PFAM: Radical SAM domain protein.
       0.783
ADO46296.1
KEGG: cko:CKO_00026 putative symporter YidK; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.733
ADO46297.1
PFAM: sulfatase; KEGG: cko:CKO_00025 hypothetical protein.
       0.720
ADO46295.1
Transcriptional regulator, AraC family; KEGG: cko:CKO_00027 hypothetical protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
       0.529
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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