Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADO46369.1PFAM: Citrate transporter; KEGG: cko:CKO_03080 hypothetical protein. (434 aa)    
Predicted Functional Partners:
cdh
TIGRFAM: CDP-diacylglycerol pyrophosphatase; KEGG: kpu:KP1_5364 CDP-diacylglycerol pyrophosphatase; PFAM: CDP-diacylglycerol pyrophosphatase.
       0.643
ADO46367.1
Anion transporter; KEGG: ses:SARI_03577 hypothetical protein; TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter.
 
     0.509
ADO49683.1
PFAM: isochorismatase hydrolase; KEGG: kva:Kvar_4063 isochorismatase hydrolase.
  
    0.474
ADO48595.1
KEGG: enc:ECL_01909 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
     0.446
ADO47208.1
PFAM: Male sterility domain; KEGG: enc:ECL_04112 hemolysin F.
  
    0.440
ADO48620.1
Helix-turn-helix domain protein; KEGG: kpu:KP1_2977 putative regulator; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein.
  
     0.440
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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