STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADO46463.1Transcriptional regulator, XRE family; KEGG: sdy:SDY_4348 putative transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (96 aa)    
Predicted Functional Partners:
ADO47718.1
PFAM: protein of unknown function DUF883 ElaB; KEGG: cko:CKO_00524 hypothetical protein.
   
    0.683
ADO48985.1
KEGG: cko:CKO_02016 hypothetical protein.
   
    0.683
dps
Ferritin Dps family protein; During stationary phase, binds the chromosome non- specifically, forming a highly ordered and stable dps-DNA co-crystal within which chromosomal DNA is condensed and protected from diverse damages. It protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral, which can be released after reduction. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction; Belongs to the Dps family.
   
    0.546
ADO46876.1
PFAM: protein of unknown function DUF1090; KEGG: kva:Kvar_0573 protein of unknown function DUF1090.
   
    0.544
ADO49197.1
KEGG: plu:plu2099 hypothetical protein.
   
 
 0.539
ADO48052.1
PFAM: Protein of unknown function DUF2525; KEGG: sdy:SDY_1052 hypothetical protein.
   
    0.525
ADO46747.1
PFAM: Barstar (barnase inhibitor); KEGG: sdy:SDY_3415 hypothetical protein.
   
    0.510
ADO48892.1
PFAM: isochorismatase hydrolase; KEGG: cko:CKO_02173 hypothetical protein.
   
    0.510
ADO49003.1
PFAM: isochorismatase hydrolase; KEGG: enc:ECL_02610 isochorismatase hydrolase.
   
    0.510
ADO49659.1
PFAM: isochorismatase hydrolase; KEGG: kva:Kvar_4035 isochorismatase hydrolase.
   
    0.510
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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