STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uspBPFAM: Universal stress protein B; KEGG: kva:Kvar_0242 universal stress protein B. (111 aa)    
Predicted Functional Partners:
ADO46747.1
PFAM: Barstar (barnase inhibitor); KEGG: sdy:SDY_3415 hypothetical protein.
  
    0.804
ADO49574.1
PFAM: Biofilm formation regulator YbaJ; KEGG: cko:CKO_02690 hypothetical protein.
  
   
 0.771
ADO48969.1
Anti-sigma-28 factor, FlgM; KEGG: cro:ROD_11381 negative regulator of flagellin synthesis (anti-sigma factor); TIGRFAM: Anti-sigma-28 factor FlgM family protein; PFAM: Anti-sigma-28 factor FlgM family protein.
  
     0.770
ADO50353.1
KEGG: enc:ECL_00308 phage shock protein G; TIGRFAM: phage shock protein G; PFAM: shock protein G.
  
     0.766
ADO48938.1
PFAM: protein of unknown function DUF1425; KEGG: ent:Ent638_1619 hypothetical protein.
  
     0.751
tus
DNA replication terminus site-binding protein; Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence; Belongs to the Tus family.
  
     0.749
ADO49332.1
Cyd operon protein YbgE; KEGG: enc:ECL_02996 hypothetical protein; TIGRFAM: cyd operon protein YbgE; PFAM: Cyd operon protein YbgE.
  
     0.746
ADO48174.1
PFAM: protein of unknown function DUF991; KEGG: enc:ECL_01425 hypothetical protein.
  
     0.730
ADO50255.1
PFAM: regulatory protein TetR; KEGG: enc:ECL_00533 putative transcriptional regulator.
  
     0.719
ADO50643.1
PFAM: ATP synthase I chain; KEGG: kva:Kvar_5075 ATP synthase I chain.
  
     0.716
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.