Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADO46555.1PFAM: Protein of unknown function DUF2500; KEGG: kva:Kvar_0268 protein of unknown function DUF2500. (119 aa)    
Predicted Functional Partners:
ADO47177.1
KEGG: kpe:KPK_0881 hypothetical protein.
  
     0.771
tsgA
PFAM: major facilitator superfamily MFS_1; KEGG: enc:ECL_04740 putative MFS transporter.
  
     0.738
ADO46734.1
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: kva:Kvar_0439 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein.
  
     0.709
ADO48577.1
PFAM: protein of unknown function DUF1283; KEGG: ses:SARI_01439 hypothetical protein; Belongs to the UPF0482 family.
  
     0.703
ADO48979.1
KEGG: kpu:KP1_2060 biofilm formation regulatory protein BssS.
  
     0.682
ADO46372.1
PFAM: protein of unknown function DUF805; KEGG: kva:Kvar_0098 protein of unknown function DUF805.
  
     0.651
ADO49574.1
PFAM: Biofilm formation regulator YbaJ; KEGG: cko:CKO_02690 hypothetical protein.
  
     0.645
ADO48938.1
PFAM: protein of unknown function DUF1425; KEGG: ent:Ent638_1619 hypothetical protein.
  
     0.642
ADO46910.1
PFAM: Fimbrial protein domain-containing protein; KEGG: stm:STM0025 fimbrial subunit.
  
     0.626
ADO47494.1
KEGG: ent:Ent638_3019 enhanced serine sensitivity protein SseB.
 
     0.620
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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