Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADO46579.1PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sed:SeD_A3914 putative dehydrogenase. (345 aa)    
Predicted Functional Partners:
ADO48972.1
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cko:CKO_01994 hypothetical protein.
  
     0.621
ADO46578.1
PFAM: GCN5-related N-acetyltransferase; KEGG: ent:Ent638_3849 GCN5-related N-acetyltransferase.
     
 0.506
ADO47752.1
PFAM: oxidoreductase domain protein; KEGG: seh:SeHA_C2927 putative dehydrogenase.
  
     0.506
ADO46580.1
PFAM: Pirin domain protein; KEGG: sea:SeAg_B3744 protein YhhW; Belongs to the pirin family.
       0.499
lysS
KEGG: kva:Kvar_0747 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.450
lysS-2
KEGG: kva:Kvar_0747 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.450
cobB
PFAM: Silent information regulator protein Sir2; KEGG: kva:Kvar_3263 silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
    
   0.400
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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