Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADO46647.1TIGRFAM: integral membrane protein, YccS/YhfK family; KEGG: enc:ECL_04735 YccS/YhfK family integral membrane protein. (693 aa)    
Predicted Functional Partners:
ADO47562.1
KEGG: enc:ECL_03770 hypothetical protein.
  
     0.772
ADO47454.1
TIGRFAM: HAD superfamily (subfamily IF) hydrolase, YfhB; KEGG: cko:CKO_00223 hypothetical protein.
  
     0.763
ADO47072.1
KEGG: cko:CKO_04333 hypothetical protein.
  
     0.761
ADO48787.1
KEGG: enc:ECL_02427 putative regulatory protein.
  
     0.755
ADO48994.1
KEGG: efe:EFER_1895 hypothetical protein.
  
     0.755
ADO47591.1
PFAM: protein of unknown function DUF1131; KEGG: efe:EFER_0740 hypothetical protein.
  
     0.749
ADO46556.1
PFAM: protein of unknown function DUF1145; KEGG: kva:Kvar_0269 protein of unknown function DUF1145.
  
     0.734
secM
Secretion monitor family proten; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.733
ADO49845.1
KEGG: enc:ECL_00927 hypothetical protein.
  
     0.732
ADO49858.1
Signaling modulator of AmpD, AmpE; KEGG: kpu:KP1_0934 regulatory protein AmpE.
  
     0.730
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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