Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADO46653.1KEGG: cko:CKO_04760 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; Valyl-tRNA synthetase, class Ia, tRNA binding arm; SMART: AAA ATPase. (634 aa)    
Predicted Functional Partners:
kefG
NAD(P)H dehydrogenase (quinone); Regulatory subunit of a potassium efflux system that confers protection against electrophiles. Required for full activity of KefB.
  
    0.579
kefB
Potassium efflux system protein; Pore-forming subunit of a potassium efflux system that confers protection against electrophiles. Catalyzes K(+)/H(+) antiport.
     
 0.579
ADO46652.1
PFAM: alpha/beta hydrolase fold; KEGG: kpe:KPK_0378 putative hydrolase.
  
    0.577
ADO46651.1
PFAM: protein of unknown function UPF0270; KEGG: kva:Kvar_0362 protein of unknown function UPF0270; Belongs to the UPF0270 family.
       0.571
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
 
 0.535
ADO46656.1
PFAM: Conserved hypothetical protein CHP02443; KEGG: kva:Kvar_0367 hypothetical protein.
       0.530
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
   0.526
rplD
Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel.
   
 
 0.521
rpsG
Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
  
 
 0.519
rpmA
KEGG: ses:SARI_04321 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.511
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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