Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADO46747.1PFAM: Barstar (barnase inhibitor); KEGG: sdy:SDY_3415 hypothetical protein. (91 aa)    
Predicted Functional Partners:
uspB
PFAM: Universal stress protein B; KEGG: kva:Kvar_0242 universal stress protein B.
  
    0.821
ADO46371.1
PFAM: protein of unknown function DUF1454; KEGG: kva:Kvar_0097 protein of unknown function DUF1454.
  
     0.772
ADO47783.1
KEGG: kva:Kvar_1446 hypothetical protein.
  
     0.770
wzzE
Lipopolysaccharide biosynthesis protein; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family.
  
     0.769
ADO48969.1
Anti-sigma-28 factor, FlgM; KEGG: cro:ROD_11381 negative regulator of flagellin synthesis (anti-sigma factor); TIGRFAM: Anti-sigma-28 factor FlgM family protein; PFAM: Anti-sigma-28 factor FlgM family protein.
  
     0.768
ADO48459.1
PFAM: Haemolysin expression modulating family protein; KEGG: ctu:Ctu_20090 OriC-binding nucleoid-associated protein.
  
     0.767
ADO49574.1
PFAM: Biofilm formation regulator YbaJ; KEGG: cko:CKO_02690 hypothetical protein.
  
     0.764
ADO49210.1
PFAM: Sensory transduction regulator, putative; KEGG: kva:Kvar_3493 sensory transduction regulator, putative.
  
     0.761
bamC
Lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.745
ADO49332.1
Cyd operon protein YbgE; KEGG: enc:ECL_02996 hypothetical protein; TIGRFAM: cyd operon protein YbgE; PFAM: Cyd operon protein YbgE.
  
     0.743
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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