Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADO46952.1KEGG: pau:PA14_03370 hypothetical protein. (615 aa)    
Predicted Functional Partners:
ADO46951.1
KEGG: pmr:PMI1916 hypothetical protein.
       0.773
ADO46950.1
KEGG: pmr:PMI1917 hypothetical protein.
       0.741
ADO46953.1
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
       0.661
ADO46955.1
KEGG: ana:alr0499 type I site-specific deoxyribonuclease; TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase.
       0.526
ADO46954.1
PFAM: restriction modification system DNA specificity domain; KEGG: ana:all2687 type I restriction-modification enzyme S subunit.
       0.521
ADO46956.1
KEGG: ssv:SSU98_1796 hypothetical protein.
       0.430
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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