Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADO46998.1KEGG: ypy:YPK_2496 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7. (325 aa)    
Predicted Functional Partners:
ADO47000.1
KEGG: cko:CKO_03565 hypothetical protein; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.
 
  
 0.971
ADO46999.1
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pct:PC1_0343 tripartite ATP-independent periplasmic transporter DctQ component.
 
  
 0.948
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.640
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
   
 0.574
ADO46882.1
KEGG: ent:Ent638_3545 D-altronate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein.
 
     0.529
uxaC
KEGG: ctu:Ctu_04620 glucuronate isomerase; PFAM: Glucuronate isomerase.
 
   
 0.522
uxaB
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: sfv:SFV_1580 altronate oxidoreductase; Belongs to the mannitol dehydrogenase family. UxaB subfamily.
 
  
 0.469
ADO47725.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: set:SEN2632 hypothetical protein.
  
   
 0.467
ADO48287.1
PFAM: MmgE/PrpD family protein; KEGG: eic:NT01EI_2142 hypothetical protein.
 
  
 0.450
ADO47733.1
Transcriptional regulator, IclR family; KEGG: set:SEN2274 putative transcriptional regulator; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR.
 
     0.412
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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