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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADO47006.1PFAM: protein of unknown function DUF388, OB-fold; KEGG: ent:Ent638_3428 hypothetical protein. (137 aa)    
Predicted Functional Partners:
ADO48283.1
PFAM: Propeptide PepSY amd peptidase M4; KEGG: dar:Daro_2303 hypothetical protein.
  
    0.879
ADO47004.1
Integral membrane sensor signal transduction histidine kinase; KEGG: kpu:KP1_4721 sensor protein QseC; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
 
   
 0.734
ADO47696.1
PFAM: YfbU family protein; KEGG: kpu:KP1_3931 hypothetical protein; Belongs to the UPF0304 family.
  
     0.602
ADO47005.1
Two component transcriptional regulator, winged helix family; KEGG: kpu:KP1_4720 DNA-binding transcriptional regulator QseB; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver.
  
  
 0.584
ADO47007.1
Transcriptional regulator, AraC family; KEGG: sea:SeAg_B3356 transcription activator, effector binding; PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
  
  
 0.572
ADO47003.1
PFAM: NAD(P)H dehydrogenase (quinone); KEGG: sbc:SbBS512_E3461 modulator of drug activity B.
 
     0.523
ADO48641.1
Aromatic amino acid transporter; KEGG: ect:ECIAI39_4313 tryptophan permease TnaB; TIGRFAM: aromatic amino acid transporter; PFAM: Tryptophan/tyrosine permease.
  
     0.518
ADO46865.1
KEGG: seg:SG3135 putative membrane transport protein.
  
     0.474
ADO47459.1
KEGG: enc:ECL_03892 hypothetical protein.
  
    0.459
ADO46813.1
Aromatic amino acid transporter; KEGG: mtr; tryptophan-specific transport protein; TIGRFAM: aromatic amino acid transporter; PFAM: Tryptophan/tyrosine permease.
  
     0.447
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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