Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADO47086.1KEGG: enc:ECL_04274 deoxyribonuclease I; PFAM: Endonuclease I. (235 aa)    
Predicted Functional Partners:
sprT
Protein of unknown function SprT; KEGG: ent:Ent638_3348 hypothetical protein; manually curated; SMART: protein of unknown function SprT; Belongs to the SprT family.
     
 0.741
ADO47085.1
Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
     
 0.726
gshB
TIGRFAM: glutathione synthetase; KEGG: efe:EFER_2886 glutathione synthetase; PFAM: glutathione synthetase ATP-binding; glutathione synthetase domain protein; Belongs to the prokaryotic GSH synthase family.
       0.691
ADO47083.1
PFAM: protein of unknown function DUF179; KEGG: ent:Ent638_3352 hypothetical protein; Belongs to the UPF0301 (AlgH) family.
       0.662
yqgF
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.649
thiI
Thiamine biosynthesis/tRNA modification protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
  
   
 0.503
ADO48372.1
KEGG: kpe:KPK_3125 DNA polymerase V subunit UmuC; PFAM: UMUC domain protein DNA-repair protein.
 
 
   0.428
ADO48141.1
KEGG: eoj:ECO26_1697 DNA polymerase V subunit UmuC; PFAM: UMUC domain protein DNA-repair protein; Belongs to the DNA polymerase type-Y family.
 
 
   0.427
ADO47088.1
TIGRFAM: sugar transporter; KEGG: kva:Kvar_0705 sugar transporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
       0.404
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.