Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADO47276.1PFAM: Toxin-coregulated pilus subunit TcpA; KEGG: cro:ROD_46461 putative type IV pilin. (240 aa)    
Predicted Functional Partners:
ADO47284.1
Type II secretion system F domain protein; KEGG: cro:ROD_46541 putative type IV pilus biogenesis protein; manually curated; PFAM: Type II secretion system F domain.
  
  
 0.799
ADO47283.1
PFAM: type II secretion system protein E; KEGG: cro:ROD_46531 putative type IV pilus biogenesis protein CfcH.
  
 
 0.770
ADO47286.1
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.655
ADO47279.1
KEGG: cro:ROD_46491 putative type IV pilus biogenesis protein.
  
  
 0.615
ADO47277.1
Hypothetical protein; KEGG: cro:ROD_46471 putative type IV pilus biogenesis protein.
       0.597
ADO47278.1
KEGG: cro:ROD_46481 putative type IV pilus biogenesis protein.
       0.559
ADO49183.1
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.549
ADO49862.1
PFAM: type II secretion system protein E; KEGG: enc:ECL_00903 protein transport protein HofB.
  
 
 0.549
ADO49120.1
KEGG: kpn:KPN_00940 recombination protein; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.
  
  
 0.546
ADO49182.1
KEGG: cko:CKO_02226 hypothetical protein; TIGRFAM: general secretion pathway protein F; PFAM: Type II secretion system F domain.
  
  
 0.534
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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