Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADO47344.1Putative transcriptional regulator, Nlp; KEGG: kpn:KPN_02950 putative cytoplasmic protein. (82 aa)    
Predicted Functional Partners:
ADO48494.1
PFAM: protein of unknown function DUF1471; KEGG: kpu:KP1_2535 hypothetical protein.
  
     0.686
ADO47345.1
Manually curated; PFAM: helix-turn-helix domain protein; KEGG: dze:Dd1591_2573 transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein.
  
    0.542
ADO49575.1
PFAM: Haemolysin expression modulating family protein; KEGG: sdy:SDY_0459 hemolysin expression-modulating protein.
  
     0.531
ADO47971.1
PFAM: porin Gram-negative type; KEGG: spe:Spro_3264 outer membrane porin protein C.
  
     0.465
ADO48702.1
PFAM: porin Gram-negative type; KEGG: spe:Spro_3264 outer membrane porin protein C.
  
     0.445
ADO47346.1
Manually curated; PFAM: helix-turn-helix domain protein; KEGG: dze:Dd1591_2573 transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein.
  
    0.438
ADO46556.1
PFAM: protein of unknown function DUF1145; KEGG: kva:Kvar_0269 protein of unknown function DUF1145.
  
     0.430
ADO50246.1
KEGG: enc:ECL_00545 putative outer membrane lipoprotein.
  
     0.429
ADO48069.1
PFAM: Tol-Pal system TolA; KEGG: sgl:SG0885 colicin import protein TolA.
  
     0.422
ADO46823.1
KEGG: cro:ROD_46781 hypothetical protein; Belongs to the UPF0306 family.
  
     0.421
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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