STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADO47403.1KEGG: ctu:Ctu_32320 protein LysB; manually curated; TIGRFAM: phage lysis regulatory protein, LysB family. (147 aa)    
Predicted Functional Partners:
ADO47406.1
PFAM: tail X family protein; KEGG: kpn:KPN_04877 putative prophage tail component protein.
  
    0.937
ADO47405.1
KEGG: see:SNSL254_A4371 putative prophage Hp1 family holin.
  
    0.933
ADO47408.1
PFAM: replication gene A; KEGG: ent:Ent638_3505 bacteriophage replication gene A.
  
    0.895
ADO47404.1
PFAM: glycoside hydrolase family 24; KEGG: ent:Ent638_3494 glycoside hydrolase family protein.
  
    0.877
ADO47401.1
KEGG: etw:ECSP_2856 P2 phage tail completion protein R, GpR.
  
    0.875
ADO47399.1
PFAM: GPW/gp25 family protein; KEGG: ecz:ECS88_2199 baseplate assembly protein W (gpW).
  
    0.826
ADO47389.1
PFAM: tail E family protein; KEGG: ecz:ECS88_2189 tail protein E (GpE).
  
    0.708
ADO47386.1
PFAM: P2 GpU family protein; KEGG: ecg:E2348C_2891 predicted tail fiber protein.
   
    0.703
ADO47392.1
PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: ecg:E2348C_2886 predicted DNA-invertase.
   
    0.690
ADO47397.1
TIGRFAM: phage tail protein I; KEGG: ent:Ent638_3485 phage tail protein I.
  
    0.654
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.