STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADO47522.1Transcriptional regulator, RpiR family; PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: enc:ECL_03810 RpiR family transcriptional regulator. (280 aa)    
Predicted Functional Partners:
ADO47524.1
PFAM: thiamine pyrophosphate central domain-containing protein; thiamine pyrophosphate TPP-binding domain-containing protein; KEGG: eic:NT01EI_2136 putative malonic semialdehyde oxidative decarboxylase; Belongs to the TPP enzyme family.
 
   
 0.864
ADO47530.1
PFAM: Protein of unknown function DUF2090; PfkB domain protein; KEGG: enc:ECL_03802 5-dehydro-2-deoxygluconokinase.
 
     0.831
ADO47532.1
KEGG: enc:ECL_03800 5-deoxy-glucuronate isomerase.
 
   
 0.822
ADO47531.1
Myo-inosose-2 dehydratase; KEGG: cko:CKO_03985 hypothetical protein; PFAM: Xylose isomerase domain-containing protein TIM barrel.
 
     0.803
ADO47525.1
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cko:CKO_03991 hypothetical protein.
 
   
 0.698
ADO47529.1
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cko:CKO_03987 hypothetical protein.
 
   
 0.604
ADO47523.1
KEGG: enc:ECL_03809 methylmalonate-semialdehyde dehydrogenase; TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase.
 
    0.566
ADO49130.1
Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: cro:ROD_09691 putative DNA binding protein.
  
   
 0.531
ADO48193.1
Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: cro:ROD_18931 putative hex-regulon repressor (RpiR-family transcriptional regulator).
  
   
 0.469
ADO49382.1
TIGRFAM: PTS system, N-acetylglucosamine-specific IIBC subunit; PTS system, glucose-like IIB subunint; PTS system, glucose subfamily, IIA subunit; KEGG: ent:Ent638_1194 PTS system, N-acetylglucosamine-specific IIBC subunit; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site; sugar-specific permease EIIA 1 domain.
  
  
 0.455
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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