STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADO48241.1Outer membrane lipoprotein, Slp family; KEGG: kpu:KP1_3448 putative outer membrane protein; TIGRFAM: outer membrane lipoprotein, Slp family; PFAM: outer membrane lipoprotein Slp. (195 aa)    
Predicted Functional Partners:
ADO48240.1
PFAM: peptidase M22 glycoprotease; KEGG: kpe:KPK_1969 glycoprotease family protein.
  
  
 0.760
tus
DNA replication terminus site-binding protein; Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence; Belongs to the Tus family.
  
     0.704
ADO49574.1
PFAM: Biofilm formation regulator YbaJ; KEGG: cko:CKO_02690 hypothetical protein.
  
     0.663
ADO48938.1
PFAM: protein of unknown function DUF1425; KEGG: ent:Ent638_1619 hypothetical protein.
  
     0.657
ADO48979.1
KEGG: kpu:KP1_2060 biofilm formation regulatory protein BssS.
  
     0.647
aaeX
PFAM: protein of unknown function DUF1656; KEGG: cro:ROD_45731 hypothetical protein.
  
     0.626
smg
PFAM: protein of unknown function DUF494; KEGG: ent:Ent638_3716 hypothetical protein; Belongs to the Smg family.
  
     0.619
ADO46600.1
PFAM: phosphoribosyltransferase; KEGG: ses:SARI_04105 gluconate periplasmic binding protein.
      
 0.618
ADO47869.1
KEGG: enc:ECL_00096 hypothetical protein.
      
 0.618
ADO48563.1
PFAM: UspA domain-containing protein; KEGG: kva:Kvar_2769 UspA domain protein.
      
 0.618
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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