Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
slyARegulatory protein MarR; Transcription regulator that can specifically activate or repress expression of target genes; Belongs to the SlyA family. (144 aa)    
Predicted Functional Partners:
ADO48439.1
PFAM: protein of unknown function DUF1656; KEGG: kva:Kvar_2321 protein of unknown function DUF1656.
  
  
 0.664
ADO48438.1
PFAM: secretion protein HlyD family protein; KEGG: kpn:KPN_01983 putative multidrug resistance protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.632
hfq
RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
   
  
 0.623
ihfA
Integration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
   
  
 0.597
ADO48324.1
KEGG: enc:ECL_01633 H-NS protein; PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; Belongs to the histone-like protein H-NS family.
   
  
 0.586
ADO48437.1
PFAM: Fusaric acid resistance protein conserved region; KEGG: kpn:KPN_01984 hypothetical protein.
     
 0.558
ADO46737.1
Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
      
 0.554
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
      
 0.552
ihfB
Integration host factor, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
   
  
 0.538
ADO49255.1
PFAM: virulence-related outer membrane protein; KEGG: ses:SARI_02093 outer membrane protein X.
  
  
 0.513
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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