STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADO48628.1KEGG: enc:ECL_01858 ssrAB activated protein. (447 aa)    
Predicted Functional Partners:
ADO48629.1
PFAM: virulence protein SrfB; KEGG: enc:ECL_01857 virulence protein SrfB.
  
 0.989
ADO48630.1
PFAM: Virulence effector, SrfC; KEGG: enc:ECL_01856 putative virulence protein.
 
  
 0.965
ADO50241.1
Transcriptional regulator, LuxR family; KEGG: cro:ROD_32121 transcriptional regulatory protein EntR (entericidin R); PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR.
  
     0.763
ADO48970.1
PFAM: FlgN family protein; KEGG: set:SEN1877 flagella synthesis protein FlgN.
  
     0.741
ADO46421.1
Mannitol repressor, MtlR; PFAM: Mannitol repressor; KEGG: ses:SARI_03953 mannitol repressor protein.
  
     0.656
ADO47905.1
KEGG: cro:ROD_21811 putative colanic acid biosynthesis pyruvyl transferase.
  
     0.571
ADO47496.1
Alpha-2-macroglobulin domain protein; Protects the bacterial cell from host peptidases.
 
  
 0.552
ycgR
YcgR family protein; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility.
  
     0.551
ADO48065.1
PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: seh:SeHA_C2187 flagellar assembly protein H.
  
    0.532
ADO47481.1
PFAM: protein of unknown function DUF1007; KEGG: kpu:KP1_4120 putative ABC-type transport protein.
  
     0.510
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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