STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADO48634.1KEGG: kpu:KP1_2987 hypothetical protein. (81 aa)    
Predicted Functional Partners:
patD
1-pyrroline dehydrogenase; Catalyzes the oxidation 4-aminobutanal (gamma- aminobutyraldehyde) to 4-aminobutanoate (gamma-aminobutyrate or GABA). This is the second step in one of two pathways for putrescine degradation, where putrescine is converted into 4-aminobutanoate via 4- aminobutanal. Also functions as a 5-aminopentanal dehydrogenase in a a L-lysine degradation pathway to succinate that proceeds via cadaverine, glutarate and L-2-hydroxyglutarate.
       0.462
ADO48636.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: enc:ECL_01852 putative spermidine/putrescine transport system permease protein.
       0.436
ADO48637.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eum:ECUMN_1690 putative spermidine/putrescine transporter subunit; permease of ABC superfamily transporter.
       0.436
ADO48638.1
KEGG: ent:Ent638_2127 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
       0.436
ADO48639.1
PFAM: extracellular solute-binding protein family 1; KEGG: eum:ECUMN_1688 putative spermidine/putrescine transporter subunit; periplasmic-binding component of ABC superfamily transporter.
       0.419
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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