Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADO48640.1Transcriptional regulator, GntR family with aminotransferase domain; KEGG: kpn:KPN_01929 transcription regulator GntR; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH. (481 aa)    
Predicted Functional Partners:
ADO48641.1
Aromatic amino acid transporter; KEGG: ect:ECIAI39_4313 tryptophan permease TnaB; TIGRFAM: aromatic amino acid transporter; PFAM: Tryptophan/tyrosine permease.
       0.578
ADO48639.1
PFAM: extracellular solute-binding protein family 1; KEGG: eum:ECUMN_1688 putative spermidine/putrescine transporter subunit; periplasmic-binding component of ABC superfamily transporter.
     
 0.416
tnaA
TIGRFAM: tryptophanase; KEGG: sfv:SFV_3805 tryptophanase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase.
       0.400
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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