STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADO48737.1KEGG: kva:Kvar_3008 phage shock protein PspD; TIGRFAM: phage shock protein PspD; PFAM: shock protein PspD. (72 aa)    
Predicted Functional Partners:
ADO48739.1
KEGG: efe:EFER_1657 phage shock protein B; TIGRFAM: phage shock protein B; PFAM: shock B family protein.
  
  
 0.967
ADO48738.1
KEGG: kva:Kvar_3009 phage shock protein C, PspC; TIGRFAM: phage shock protein C; PFAM: PspC domain protein.
  
  
 0.966
ADO48740.1
KEGG: efe:EFER_1658 phage shock protein PspA; TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein.
  
  
 0.890
ADO48735.1
PFAM: Uncharacterised protein family UPF0283; KEGG: enc:ECL_01793 hypothetical protein.
     
 0.664
ADO48736.1
PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: eok:G2583_1668 hypothetical protein.
     
 0.664
ADO48741.1
Sigma54 specific transcriptional activator, PspF, Fis family; TIGRFAM: psp operon transcriptional activator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; KEGG: cro:ROD_17051 PSP operon transcriptional activator; SMART: AAA ATPase.
     
 0.457
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.