Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ADO48890.1PFAM: Mig-14 family protein; KEGG: esa:ESA_pESA3p05439 hypothetical protein. (296 aa)    
Predicted Functional Partners:
ADO48210.1
PFAM: protein of unknown function DUF535; KEGG: kpe:KPK_1935 hypothetical protein.
   
  
 0.697
ADO48891.1
KEGG: ecm:EcSMS35_1396 hypothetical protein.
       0.551
ADO47890.1
TIGRFAM: capsular exopolysaccharide family; KEGG: enc:ECL_03383 tyrosine kinase; PFAM: lipopolysaccharide biosynthesis protein.
     
 0.442
ADO48889.1
PFAM: Protein of unknown function DUF2534; KEGG: kva:Kvar_3189 protein of unknown function DUF2534.
       0.435
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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