Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
ADO49081.1PFAM: Protein of unknown function DUF2057; KEGG: sew:SeSA_A1140 hypothetical protein; Belongs to the UPF0319 family. (197 aa)    
Predicted Functional Partners:
ADO48202.1
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ses:SARI_01069 hypothetical protein.
  
   
 0.750
ycgR
YcgR family protein; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility.
  
     0.712
ADO48171.1
PFAM: flagellar FlhE family protein; KEGG: set:SEN1091 flagellar protein FlhE precursor.
  
     0.708
ADO50372.1
KEGG: cro:ROD_37231 putative lipoprotein.
  
     0.702
ADO50371.1
PFAM: protein of unknown function DUF1017; KEGG: ecx:EcHS_A4267 hypothetical protein.
  
     0.641
ADO50012.1
PFAM: Protein of unknown function DUF2501; KEGG: cko:CKO_03439 hypothetical protein.
  
     0.630
ADO47099.1
Mannitol repressor, MtlR; PFAM: Mannitol repressor; KEGG: ses:SARI_04567 putative DNA-binding transcriptional regulator.
  
     0.610
ADO47586.1
Transcriptional regulator, AraC family; Manually curated; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cko:CKO_00349 transcriptional regulator EutR; SMART: Helix-turn-helix, AraC domain.
  
     0.599
mgsA
Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.
     
 0.579
ADO50286.1
Transcriptional regulator, AraC family; KEGG: ect:ECIAI39_0540 DNA-binding transcriptional activator of porin biosynthesis; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
  
     0.572
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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