STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADO49157.1TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein DNA-binding; KEGG: kva:Kvar_3463 cold-shock DNA-binding domain protein; SMART: Cold shock protein. (73 aa)    
Predicted Functional Partners:
rmf
Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family.
   
  
 0.534
ADO48294.1
PFAM: Protein of unknown function DUF2583; KEGG: ent:Ent638_2343 hypothetical protein.
   
    0.532
ADO48242.1
PFAM: AMP-dependent synthetase and ligase; KEGG: ebd:ECBD_1837 long-chain-fatty-acid--CoA ligase.
   
   0.514
ADO48728.1
PFAM: AMP-dependent synthetase and ligase; KEGG: cko:CKO_03346 putative crotonobetaine/carnitine-CoA ligase.
   
   0.514
clpS
ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
  
  
 0.513
ADO48901.1
UspA domain-containing protein; Required for resistance to DNA-damaging agents. Belongs to the universal stress protein A family.
   
  
 0.503
dadA
FAD dependent oxidoreductase; Oxidative deamination of D-amino acids.
   
    0.502
rpsL
Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 
 0.451
ADO49155.1
TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; KEGG: ssn:SSON_0883 ATP-dependent Clp protease ATP-binding subunit; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.
  
  
 0.439
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 
 0.416
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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