Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADO49277.1KEGG: cko:CKO_02333 hypothetical protein; PFAM: ABC transporter related; SMART: AAA ATPase. (579 aa)    
Predicted Functional Partners:
ADO49278.1
PFAM: ABC-2 type transporter; KEGG: set:SEN0762 putative inner membrane protein.
  
 0.997
ADO49279.1
PFAM: ABC-2 type transporter; KEGG: ent:Ent638_1283 ABC-2 type transporter.
  
 0.987
ADO49276.1
PFAM: secretion protein HlyD family protein; KEGG: enc:ECL_02940 putative HlyD family secretion protein.
 
  
 0.982
ADO49275.1
PFAM: Transcriptional regulator TetR; regulatory protein TetR; KEGG: cro:ROD_07961 TetR-family transcriptional regulator.
 
    0.886
ADO49025.1
PFAM: ABC-2 type transporter; KEGG: kpu:KP1_0698 antibiotic transport system permease component.
  
 0.839
ADO49023.1
PFAM: secretion protein HlyD family protein; KEGG: cko:CKO_04936 hypothetical protein.
 
  
 0.774
rhlE
DEAD/DEAH box helicase domain protein; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.
   
   0.487
dinG
Helicase c2; DNA-dependent ATPase and 5'-3' DNA helicase.
       0.448
ADO49024.1
KEGG: kva:Kvar_4530 ABC transporter related protein; PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase.
 
   
0.416
ADO49839.1
PFAM: ABC-2 type transporter; KEGG: kpu:KP1_0963 putative ABC transport system integral membrane component.
  
  
 0.404
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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